Umeyama, Hideaki : rechercher sur Z-Library

Le plus grand référentiel d'articles scientifiques au monde. 70,000,000+ d'articles gratuitement.

Don't use scam websites

Livres
Articles (174)
Les plus populaires
Liste
- Liste
- Tableau

1

Shape and conformation : Predictive contribution of computer graphics for protein engineering and drug design

Hideaki Umeyama

Journal:

Journal of Molecular Graphics

Année:

1992

Langue:

english

Fichier:

PDF, 323 KB

english, 1992

2

Intermediate State during the Crystal Transition in Aspartame, Studied with Thermal Analysis, Solid-State NMR, and Molecular Dynamics Simulation.

EBISAWA, Kazuyoshi, NAGASHIMA, Nobuya, FUKUHARA, Ken-ichi, KUMON, Satoshi, KISHIMOTO, Shin-ichi, SUZUKI, Ei-ichiro, YONEDA, Shigetaka, UMEYAMA, Hideaki

Journal:

CHEMICAL & PHARMACEUTICAL BULLETIN

Année:

2000

Fichier:

PDF, 1.27 MB

2000

3

Molecular Mechanisms of Type II Factor XIII Deficiency: Novel Gly562-Arg Mutation and C-Terminal Truncation of the A Subunit Cause Factor XIII Deficiency as Characterized in a Mammalian Expression System

Takahashi, Nobumasa, Tsukamoto, Hiroaki, Umeyama, Hideaki, Castaman, Giancarlo, Rodeghiero, Francesco, Ichinose, Akitada

Journal:

Année:

1998

Fichier:

PDF, 394 KB

1998

4

Molecular dynamics simulation of a rhinovirus capsid under rotational symmetry boundary conditions

Yoneda, Shigetaka, Kitazawa, Masako, Umeyama, Hideaki

Journal:

Journal of Computational Chemistry

Année:

1996

Langue:

english

Fichier:

PDF, 1.08 MB

english, 1996

5

The role played by environmental residues on sidechain torsional angles within homologous families of proteins: A new method of sidechain modeling

Koji Ogata, Hideaki Umeyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

1998

Langue:

english

Fichier:

PDF, 219 KB

english, 1998

6

Algorithm for normal mode analysis with general internal coordinates

Kenshu Kamiya, Yoko Sugawara, Hideaki Umeyama

Journal:

Journal of Computational Chemistry

Année:

2003

Langue:

english

Fichier:

PDF, 199 KB

english, 2003

7

A Theoretical Approach to the Bell-Shaped Dependency of Cell Proliferation on the Hormone Concentration

Junichi Higo, Hideaki Umeyama

Journal:

Journal of Theoretical Biology

Année:

1997

Langue:

english

Fichier:

PDF, 297 KB

english, 1997

8

Energy decomposition analysis along the reaction coordinate. Theory and example: F− + HF → [FHF]−

Hideaki Umeyama, Kazuo Kitaura, Keiji Morokuma

Journal:

Chemical Physics Letters

Année:

1975

Langue:

english

Fichier:

PDF, 524 KB

english, 1975

9

The origin of barriers to internal rotation. An energy decomposition study for CH3CH3, CH3NH2 and CH3OH

Keiji Morokuma, Hideaki Umeyama

Journal:

Chemical Physics Letters

Année:

1977

Langue:

english

Fichier:

PDF, 517 KB

english, 1977

10

Molecular orbital study of the effects of ionic amino acid residues on proton transfer energetics in the active site of carboxypeptidase a

Setsuko Nakagawa, Hideaki Umeyama

Journal:

Chemical Physics Letters

Année:

1981

Langue:

english

Fichier:

PDF, 370 KB

english, 1981

11

A molecular orbital study on the enzymic reaction mechanism of α-chymotrypsm

Hideaki Umeyama, Akira Imamura, Chikayoshi Nagata, Manabu Hanano

Journal:

Journal of Theoretical Biology

Année:

1973

Langue:

english

Fichier:

PDF, 965 KB

english, 1973

12

Molecular orbital study on the interaction between coenzymes and enzymes; NAD+ or NADH and dehydrogenases

Hideaki Umeyama, Akira Imamura, Chikayoshi Nagata

Journal:

Journal of Theoretical Biology

Année:

1974

Langue:

english

Fichier:

PDF, 1.00 MB

english, 1974

13

Ab initio molecular orbital study on the effects of zinc ion, its ligands and ionic amino acid residues for proton transfer energetics between glu 270 and Zn co-ordinated water molecule in carboxypeptidase A

Setsuko Nakagawa, Hideaki Umeyama

Journal:

Journal of Theoretical Biology

Année:

1982

Langue:

english

Fichier:

PDF, 1.16 MB

english, 1982

14

The pKa value of His 57-Asp 102 couple in the active site of bovine pancreatic β-trypsin: A molecular orbital study

Hideaki Umeyama, Setsuko Nakagawa

Journal:

Journal of Theoretical Biology

Année:

1982

Langue:

english

Fichier:

PDF, 1.04 MB

english, 1982

15

The role of the environment around the catalytic triad in β-trypsin: A molecular orbital study

Setsuko Nakagawa, Hideaki Umeyama

Journal:

Bioorganic Chemistry

Année:

1982

Langue:

english

Fichier:

PDF, 356 KB

english, 1982

16

Visualization of electrostatic recognition by enzymes for their ligands and cofactors

Haruki Nakamura, Katsuichiro Komatsu, Setsuko Nakagawa, Hideaki Umeyama

Journal:

Journal of Molecular Graphics

Année:

1985

Langue:

english

Fichier:

PDF, 1.19 MB

english, 1985

17

Protein modeling of human prorenin using the molecular dynamics method

Yasuhiko Shiratori, Setsuko Nakagawa, Hitoshi Hori, Kazuo Murakami, Hideaki Umeyama

Journal:

Journal of Molecular Graphics

Année:

1990

Langue:

english

Fichier:

PDF, 604 KB

english, 1990

18

Remarkably different structures and reaction mechanisms of ketoreductases for the opposite stereochemical control in the biosynthesis of BIQ antibiotics

Takaaki Taguchi, Kanako Kunieda, Mayuko Takeda-Shitaka, Daisuke Takaya, Noriaki Kawano, Meriel R. Kimberley, Kevin I. Booker-Milburn, G. Richard Stephenson, Hideaki Umeyama, Yutaka Ebizuka, Koji Ichin

Journal:

Bioorganic & Medicinal Chemistry

Année:

2004

Langue:

english

Fichier:

PDF, 583 KB

english, 2004

19

An automatic homology modeling method consisting of database searches and simulated annealing

Koji Ogata, Hideaki Umeyama

Journal:

Journal of Molecular Graphics and Modelling

Année:

2000

Langue:

english

Fichier:

PDF, 1.08 MB

english, 2000

20

Motion of an antiviral compound in a rhinovirus capsid under rotational symmetry boundary conditions

Shigetaka Yoneda, Teruyo Yoneda, Youji Kurihara, Hideaki Umeyama

Journal:

Journal of Molecular Graphics and Modelling

Année:

2002

Langue:

english

Fichier:

PDF, 488 KB

english, 2002

21

Amino acid similarity matrix for homology modeling derived from structural alignment and optimized by the Monte Carlo method

Koji Ogata, Masanori Ohya, Hideaki Umeyama

Journal:

Journal of Molecular Graphics and Modelling

Année:

1998

Langue:

english

Fichier:

PDF, 328 KB

english, 1998

22

A homology modeling method of an icosahedral viral capsid: inclusion of surrounding protein structures

Teruyo Yoneda, Shigetaka Yoneda, Naoko Takayama, Masako Kitazawa, Hideaki Umeyama

Journal:

Journal of Molecular Graphics and Modelling

Année:

1999

Langue:

english

Fichier:

PDF, 109 KB

english, 1999

23

Arg260-Cys mutation in severe factor XIII deficiency: conformational change of the A subunit is predicted by molecular modelling and mechanics

Akitada Ichinose, Hiroaki Tsukamoto, Tomonori Izumi, Tomio Yamazaki, Masaki Togashi, Junki Takamatsu, Hidehiko Saito, Hideaki Umeyama

Journal:

British Journal of Haematology

Année:

1998

Langue:

english

Fichier:

PDF, 1.05 MB

english, 1998

24

Evaluation of the third solvent clusters fitting procedure for the prediction of protein–protein interactions based on the results at the CAPRI blind docking study

Katsuichiro Komatsu, Youji Kurihara, Mitsuo Iwadate, Mayuko Takeda-Shitaka, Hideaki Umeyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2003

Langue:

english

Fichier:

PDF, 203 KB

english, 2003

25

Searching for protein–protein interaction sites and docking by the methods of molecular dynamics, grid scoring, and the pairwise interaction potential of amino acid residues

Genki Terashi, Mayuko Takeda-Shitaka, Daisuke Takaya, Katsuichiro Komatsu, Hideaki Umeyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 248 KB

english, 2005

26

Protein structure prediction in CASP6 using CHIMERA and FAMS

Mayuko Takeda-Shitaka, Genki Terashi, Daisuke Takaya, Kazuhiko Kanou, Mitsuo Iwadate, Hideaki Umeyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2005

Langue:

english

Fichier:

PDF, 182 KB

english, 2005

27

The SKE-DOCK server and human teams based on a combined method of shape complementarity and free energy estimation

Genki Terashi, Mayuko Takeda-Shitaka, Kazuhiko Kanou, Mitsuo Iwadate, Daisuke Takaya, Hideaki Umeyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 287 KB

english, 2007

28

Fams-ace: A combined method to select the best model after remodeling all server models

Genki Terashi, Mayuko Takeda-Shitaka, Kazuhiko Kanou, Mitsuo Iwadate, Daisuke Takaya, Akio Hosoi, Kazuhiro Ohta, Hideaki Umeyama

Journal:

Proteins: Structure, Function, and Bioinformatics

Année:

2007

Langue:

english

Fichier:

PDF, 720 KB

english, 2007

29

Non-Arrhenius temperature dependence of the rate constant for the H + H2S reaction

Masabumi Yoshimura, Mitsuo Koshi, Hiroyuki Matsui, Kenshu Kamiya, Hideaki Umeyama

Journal:

Chemical Physics Letters

Année:

1992

Langue:

english

Fichier:

PDF, 560 KB

english, 1992

30

Good on the theory: Computer Modeling of Chemical Reactions in Enzymes and Solutions by Arieh Warshel, John Wiley & Sons, 1991. UK£71.00 (xiv + 236 pages) ISBN 0 471 53395 5

Hideaki Umeyama

Journal:

Trends in Biotechnology

Année:

1992

Langue:

english

Fichier:

PDF, 119 KB

english, 1992

31

A new method for induced fit docking (genius) and its application to virtual screening of novel HCV NS3-4A protease inhibitors

Daisuke Takaya, Atsuya Yamashita, Kazue Kamijo, Junko Gomi, Masahiko Ito, Shinya Maekawa, Nobuyuki Enomoto, Naoya Sakamoto, Yoshiaki Watanabe, Ryoichi Arai, Hideaki Umeyama, Teruki Honma, Takehisa Mat

Journal:

Bioorganic & Medicinal Chemistry

Année:

2011

Langue:

english

Fichier:

PDF, 1.07 MB

english, 2011

32

Factor IX Bm Kiryu: a Val-313-to-Asp substitution in the catalytic domain results in loss of function due to a conformational change of the surface loop: evidence obtained by chimaeric modelling

Toshiyuki Miyata, Kuninori Kuze, Tomokazu Matsusue, Hitoshi Komooka, Kenshu Kamiya, Hideaki Umeyama, Akira Matsui, Hisao Kato, Akira Yoshioka

Journal:

British Journal of Haematology

Année:

1994

Langue:

english

Fichier:

PDF, 971 KB

english, 1994

33

Modulation of thrombin-induced platelet aggregation by inhibition of calpain by a synthetic peptide derived from the thiol-protease inhibitory sequence of kininogens and S-(3-nitro-2-pyridinesulfenyl)-cysteine

Rajinder N. PURI, Rei MATSUEDA, Hideaki UMEYAMA, Harlan N. BRADFORD, Robert W. COLMAN

Journal:

Année:

1993

Langue:

english

Fichier:

PDF, 935 KB

english, 1993

34

Molecular orbital studies of electron donor-acceptor complexes. 3. Energy and charge decomposition analyses for several strong complexes: carbon monoxide-borane, ammonia-borane, methylamine-borane, trimethylamine-borane, and ammonia-boron trifluoride

Umeyama, Hideaki, Morokuma, Keiji

Journal:

Journal of the American Chemical Society

Année:

1976

Langue:

english

Fichier:

PDF, 1.46 MB

english, 1976

35

Role of local induced-fit of Ser 195 in β-trypsin: A molecular orbital study

Setsuko Nakagawa, Hideaki Umeyama

Journal:

Année:

1982

Langue:

english

Fichier:

PDF, 354 KB

english, 1982

36

Elucidation of the cause for reduced activity of abnormal human plasmin containing an Ala55-Thr mutation: importance of highly conserved Ala55 in serine proteases

Mayuko Takeda-Shitaka, Hideaki Umeyama

Journal:

Année:

1998

Langue:

english

Fichier:

PDF, 396 KB

english, 1998

37

Dynamic character of the complex of human blood coagulation factor VIIa with the extracellular domain of human tissue factor: a normal mode analysis

Kenji Soejima, Youji Kurihara, Kenshu Kamiya, Hideaki Umeyama

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 276 KB

english, 1999

38

Role of Asp102 in the enzymatic reaction of bovine β-trypsin: A molecular orbital study

Hideaki Umeyama, Setsuko Nakagawa, Takako Kudo

Journal:

Journal of Molecular Biology

Année:

1981

Langue:

english

Fichier:

PDF, 842 KB

english, 1981

39

Role of catalytic residues in the formation of a tetrahedral adduct in the acylation reaction of bovine β-trypsin: A molecular orbital study

Setsuko Nakagawa, Hideaki Umeyama

Journal:

Journal of Molecular Biology

Année:

1984

Langue:

english

Fichier:

PDF, 1.37 MB

english, 1984

40

Aggregation of washed platelets by plasminogen and plasminogen activators is mediated by plasmin and is inhibited by a synthetic peptide disulfide

Rajinder N. Puri, Chang-Jun Hu, Rei Matsueda, Hideaki Umeyama, Robert W. Colman

Journal:

Thrombosis Research

Année:

1992

Langue:

english

Fichier:

PDF, 1.14 MB

english, 1992

41

Interaction between the antigen and antibody is controlled by the constant domains: Normal mode dynamics of the HEL–HyHEL-10 complex

Masaaki Adachi, Youji Kurihara, Hiroyuki Nojima, Mayuko Takeda-Shitaka, Kenshu Kamiya, Hideaki Umeyama

Journal:

Protein Science

Année:

2003

Langue:

english

Fichier:

PDF, 436 KB

english, 2003

42

The origin of hydrogen bonding. An energy decomposition study

Umeyama, Hideaki, Morokuma, Keiji

Journal:

Journal of the American Chemical Society

Année:

1977

Langue:

english

Fichier:

PDF, 2.12 MB

english, 1977

43

Origin of alkyl substituent effect in the proton affinity of amines, alcohols, and ethers

Umeyama, Hideaki, Morokuma, Keiji

Journal:

Journal of the American Chemical Society

Année:

1976

Langue:

english

Fichier:

PDF, 583 KB

english, 1976

44

Application of nested PCR for diagnosis of histoplasmosis

Ohno, Hideaki, Tanabe, Koichi, Umeyama, Takashi, Kaneko, Yukihiro, Yamagoe, Satoshi, Miyazaki, Yoshitsugu

Journal:

Journal of Infection and Chemotherapy

Année:

2013

Langue:

english

Fichier:

PDF, 263 KB

english, 2013

45

Protein modelling using a chimera reference protein derived from exons

Kajihara, Akiro, Komooka, Hitoshi, Kamiya, Kenshu, Umeyama, Hideaki

Journal:

Protein Engineering Design and Selection

Année:

1993

Langue:

english

Fichier:

PDF, 4.86 MB

english, 1993

46

New human renin inhibitors containing an unnatural amino acid, norstatine

Iizuka, Kinji, Kamijo, Tetsuhide, Kubota, Tetsuhiro, Akahane, Kenji, Umeyama, Hideaki, Kiso, Yoshiaki

Journal:

Journal of Medicinal Chemistry

Année:

1988

Langue:

english

Fichier:

PDF, 486 KB

english, 1988

47

Serum cholesterol promotes the growth ofCandida glabratain the presence of fluconazole

Nagi, Minoru, Tanabe, Koichi, Yamagoe, Satoshi, Umeyama, Takashi, Ohno, Hideaki, Miyazaki, Yoshitsugu, Nagi, Minoru, Oura, Takahiro, Kajiwara, Susumu, Nakayama, Hironobu

Journal:

Journal of Infection and Chemotherapy

Année:

2013

Langue:

english

Fichier:

PDF, 98 KB

english, 2013

48

[Part 1: Biological Sciences] || Charge State of His-57--Asp-102 Couple in a Transition State Analogue--Trypsin Complex: A Molecular Orbital Study

Hideaki Umeyama, Shuichi Hirono and Setsuko Nakagawa

Journal:

Proceedings of the National Academy of Sciences

Année:

1984

Langue:

english

Fichier:

PDF, 819 KB

english, 1984

49

Molecular orbital studies of electron donor-acceptor complexes. 4. Energy decomposition analysis of halo-complexes: ammonia-fluorine, -chlorine, -chlorine fluoride, methanamine-chlorine fluoride, formaldehyde-fluorine, hydrogen fluoride-chlorine fluoride, and fluorine-fluorine

Umeyama, Hideaki, Morokuma, Keiji, Yamabe, Shinichi

Journal:

Journal of the American Chemical Society

Année:

1977

Langue:

english

Fichier:

PDF, 1.58 MB

english, 1977

50

Molecular defect in factor IX Tokyo: Substitution of valine-182 by alanine at position P2' in the second cleavage site by factor XIa resulting in impaired activation

Maekawa, Hisato, Sugo, Teruko, Yamashita, Norifumi, Kamiya, Kenshu, Umeyama, Hideaki, Miura, Noboru, Naka, Hiroyuki, Nishimura, Takuya, Yoshioka, Akira, Matsuda, Michio

Journal:

Année:

1993

Langue:

english

Fichier:

PDF, 2.38 MB

english, 1993